DATA RECONSTRUCTION AND MODELLING

In-depth (3D) or time-resolved, on live or fixed samples

TRI-Genotoul offers a set of resources and services dedicated to transforming complex imaging data into actionable information. Starting from raw data, often consisting of series of 2D images acquired from different angles or at different depths, the platforms implement reconstruction approaches to obtain three-dimensional or time-resolved representations. In addition, modelling tools make it possible to generate 2D and 3D representations of the reconstructed data. These visualisations facilitate quality control, dataset exploration and scientific interpretation.
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Services

  • 3D depth image reconstruction
  • Time-resolved 2D or 3D image reconstruction
  • Multiparametric flow and image cytometry data visualisation
  • Registration and fusion of images acquired at different angles - Light sheet microscopy
  • Image mosaic reconstruction for large sample acquisition
  • Multimodal or multichannel image registration
  • 2D, 3D or time-resolved modelling of photonic or electronic imaging data

Access method

  • With assistance
  • As service delivery
  • Formation
  • Collaboration

Software Resources

Software

Version and options

Tray(s)

AIVIA

Artificial intelligence – guided image analysis and visualisation solutions & Cell Biology pack

FR3450

Amira

Advanced biological image analysis – Cell Biology pack

CMEAB, Restore

arivis Vision4D

Advanced data analysis for microscopy imaging

CBI, Restore

Flowjo

Advanced data analysis for flow cytometry

Infinity, IPBS, Restore

Harmony

Visualise and analyse 2D/3D images from High-Content Imaging

Restore

HCImage

Data Analysis from High-content Imaging

IPBS

IDEAS

Data exploration and analysis from image cytometry

Infinity, Restore

Imaris

AI Microscopy image analysis with Full package and Imaris batch // Imaris for Neuroscientists // Imaris for Cell Biologists + FilamentTracer

CBI, Infinity, IPBS, Restore

Infinicyt

Analysis, integration and interpretation of multivariate flow cytometry data

I2MC

Metamorph

Data Analysis from microscopy imaging

IPBS

NDPview2+

Image viewing software for large microscopic dataset

Restore

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